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CLINICAL STUDIES |
1 Department of Genetics, University of Barcelona, Barcelona, Spain
2 IBUB, Barcelona, Spain
3 CIBERER, ISCIII, Barcelona, Spain
4 Internal Medicine, URFOA, IMIM, Hospital del Mar, Autonomous University of Barcelona, Barcelona, Spain
(Correspondence should be addressed to S Balcells at Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal, 645, E-08028 Barcelona, Spain Email: sbalcells{at}ub.edu)
| Abstract |
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Design: In the present study we analysed two polymorphisms in the IL6R promoter, –1435 C/T (rs3887104) and –208 G/A (rs4845617), and the Asp358Ala polymorphism (rs8192284), in relation to both BMD and BMI in a cohort of 559 postmenopausal Spanish women.
Results: The promoter polymorphisms, –1435 C/T and –208 G/A were associated with femoral neck (FN) BMD (P=0.011 and P=0.025 respectively). The C-A and T-G promoter haplotypes were also associated with FN BMD. Additionally, the Asp358Ala variant was associated with lumbar spine BMD (P=0.038). Finally, the –208 G/A polymorphism and the C-G and C-A haplotypes were associated with BMI and obesity, where GG was the risk genotype (P=0.033 for BMI; P=0.010 for obesity).
Conclusion: These data suggest that variants in the IL6R gene are not only involved in the determination of BMI but also relevant for the determination of BMD. The IL6R gene may belong to the growing list of genes known to be involved in both phenotypes.
| Introduction |
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The IL6R gene maps to 1q21.3 and encodes the interleukin-6 (IL6) receptor-
. The action of IL6 is mediated through two kinds of receptors: IL6R (also known as gp80, CD126, IL-6R-1, IL-6R-A or IL-6R-
) and gp130 (CD130, IL-6R-ß or oncostatin M receptor). In contrast to gp130, whose expression pattern is wide and whose ligands include several interleukins, IL6R is expressed in a more restricted cell pattern, including the osteoblast and osteoclast progenitors (6, 7), and only binds its natural ligand IL6.
The IL6–IL6R complex induces the homodimerization of gp130, which mediates signalling through the JAK-STAT and ras/MAP-kinase pathways (8). IL6R may be found both as a transmembrane and as a soluble molecule (sIL6R). The latter is produced by cleavage of the former, although it may also be generated by alternative splicing (9–12). The binding capacities of IL6R and sIL6R are similar, and the IL6–sIL6R complex acts as an agonist when it binds to gp130, allowing for IL6 signalling in cells that do not express IL6R in their membranes. This process is referred to as trans-signalling (8).
IL6 is a pleiotropic cytokine that has multiple effects on different cell types (8). In bone, IL6 is produced by osteoblasts, monocytes and T cells, and has an antiapoptotic and differentiating effect on osteoblasts (13–15). Also, and more importantly, IL6 induces osteoclastogenesis and osteoclast activity (16, 17) through RANKL and OPG produced by osteoblasts (6, 18). In human osteoblasts, IL6R cannot transmit IL6 signalling until it is shed into its soluble form (19).
It is generally accepted that serum levels of IL6 and sIL6R increase with age and postmenopausal status and are higher in several pathological processes such as osteoporosis, obesity or diabetes (20–26). IL6 is known to downregulate food intake and energy expenditure through the CNS (27). IL6-deficient mice develop mature-onset obesity (28) and are protected against osteoporosis after ovariectomy (29).
Several polymorphisms have been identified in the IL6R gene, some of which have been associated with obesity, diabetes and periodontitis in different studies (29–34). However, as yet, no polymorphisms of the IL6R gene have been studied in relation to osteoporosis. The aim of the present study is to evaluate two polymorphisms in the IL6R promoter, –1435 C/T and –208 G/A, and the Asp358Ala polymorphism in exon 9 of the gene in relation to LS BMD, femoral neck (FN) BMD, BMI and obesity status. These variants were selected based on their putative functionality. The Asp358Ala is the only non-synonymous SNP in the gene with a known MAF, and the promoter polymorphisms presented putative allele-specific binding capacities for different transcription factors, according to in silico analyses. In a cohort of postmenopausal Spanish women, these polymorphisms and/or their haplotypes were found to have effects on both BMD and BMI.
| Materials and methods |
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All participants were consecutive, unselected postmenopausal Spanish women attending the baseline visit at the outpatient clinic of the Menopausal Unit of the Hospital del Mar because of menopause. Patients were prospectively recruited and included regardless of their bone density values. Criteria for exclusion from the study were a previous diagnosis of Paget's disease of bone or osteomalacia, metabolic or endocrine disorder or if they were already undergoing treatment such as hormone replacement treatment. Women who had the menopause before the age of 35 were also excluded. The data recorded were age, the number of years since menopause (ysm) for the LS BMD and FN BMD measurements, height and weight. BMI was calculated as weight/height2, and obesity was defined as BMI
30 kg/m2; 17.8% (n=99) of the individuals in the cohort were obese. According to the WHO definition of osteoporosis and based on LS BMD, 30.9% of the participants were osteoporotic, 42.6% were osteopenic and 26.5% were normal. For FN BMD, 19% of the participants were osteoporotic, 54.1% were osteopenic and 26.9% were normal. Regarding osteoporotic fractures, these were present in the cohort in the following percentages: 4.1% Colles, 7.7% vertebral, 0.5% FN and 4.7% other types. Given the small numbers, association with fracture was not performed. Blood samples and written informed consent were obtained according to the regulations of the Hospital del Mar Human Research Review Committee for Genetic Procedures. The main characteristics of the participants are listed in Table 1.
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LS BMD (L2-L4) was measured in all participants (n=559) as part of the standard protocol of the Menopause Unit. FN BMD was also measured in 315 of the women. A dual-energy X-ray densitometer (QDR 4500 SL; Hologic) was used for the measurements. BMD was expressed in grams per square centimetre and in our centre the technique had an in vivo coefficient of variation of 1.0% for LS and 1.65% for FN measurements.
DNA extraction
Genomic DNA of the participants was isolated from peripheral leukocytes according to the BloodPrep chemistry protocol (Applied Biosystems). Purification procedures were conducted on an ABI PRISM 6700 Nucleic Acid Workstation (Applied Biosystems).
Genotyping
Genotyping of –1435 C/T and –208 G/A polymorphisms Typing of –1435 C/T (rs3887104) and –208 G/A (rs4845617) polymorphisms was performed using the SNaPshot method (Applied Biosystems). A PCR fragment was generated in a 25 µl reaction containing 20 ng genomic DNA, the indicated buffer, 5% DMSO, 4 mM MgCl2, 0.2 mM of each d-NTP, 0.4 µM of each sense primer (5'-GGGGGTCCTTGAGAGAGTTC-3') and antisense primer (5'-CCGGCTCTCTACACACACTG-3') and 1.25 U Taq DNA polymerase (GeneCraft). The PCR involved an initial denaturation step at 94 °C for 5 min, followed by 38 cycles of denaturation at 94 °C for 40 s, annealing at 59 °C for 30 s and polymerization at 72 °C for 40 s, with a final elongation step at 72 °C for 5 min. The SNaPshot reaction was performed in 10 µl volume, using 3 µl clean PCR product, 3 µl SNaPshot Multiplex Reaction Mix (Applied Biosystems) and 0.2 µM of each SNaPshot primer. Primer sequences were: –1435 C/T=5'-TTTTTTTTTTTCCAGGTGCTTGTTTCTTTCTTTTTTT-3' and –208 G/A=5'-TTTTTTTTTTTTTTCGCACTGACACTGAGCCGG-3'. The reaction was run using a cycling protocol of 96 °C for 10 s, 50 °C for 5 s and 60 °C for 30 s for 25 cycles. Clean SNaPshot products were mixed with HiDi formamide and GeneScan-120 LIZ size standard (Applied Biosystems) were denatured at 95 °C for 5 min and then loaded into an ABIPRISM 310 Genetic Analyzer (Applied Biosystems). GeneMapper software (Applied Biosystems) was used to analyse the data.
Genotyping of the Asp358Ala polymorphism A fragment of 286 bp containing the Asp358Ala (A/C) (rs8192284) polymorphic site was amplified by PCR using the following pair of primers: sense (5'-AAGCTTGTCAAATGGCCTGT-3') and anti-sense (5'-GGACCCATCTCACCTCAGAA-3') in a final volume of 25 µl containing 20 ng genomic DNA, the indicated buffer, 4 mM MgCl2, 0.2 mM of each d-NTP, 0.4 µM of each primer and 1.25 U Taq DNA polymerase (GeneCraft). The PCR consisted of an initial denaturing step at 94 °C for 5 min, followed by 35 cycles of denaturing at 94 °C for 40 s, annealing at 63 °C for 30 s and polymerization at 72 °C for 40 s, with a final elongation step at 72 °C for 5 min. The PCR product was digested with the restriction enzyme Hinf I (Takara) overnight at 37 °C. The homozygote CC samples remained uncut, while the AA homozygotes gave two DNA fragments of 101 and 185 bp.
Linkage disequilibrium calculations and haplotype reconstruction
The D' and r2 linkage disequilibrium parameters were calculated using the Haploview software (35). Haplotype frequencies were obtained using Haploview and Haplo.score and showed no detectable differences (36). The Haplo.score software was also used to assign individual haplotypes and their related probabilities.
Statistical analyses
The statistical power was calculated using the Quanto v.1.1 software (37). For LS BMD (mean=0.847 and S.D.=0.150), at a significance level of 0.05, MAFs of 0.2–0.4 and 460 individuals, there would be an 80% power to detect differences in BMD of 0.04 g/cm2 (MAF=0.2) and 0.03 g/cm2 (MAF=0.4) under an additive genetic model. For FN BMD (mean=0.670 and S.D.=0.114) and 250 individuals, there would be power to detect differences in BMD of 0.04 g/cm2 (MAF=0.2) and 0.03 g/cm2 (MAF=0.4) under an additive genetic model. For the categorical variable obesity/non-obesity, the sample size of this study (n=83/385), with MAFs of 0.2–0.4 and an OR=2, would give a statistical power of 80% for both the dominant and additive models.
All the analyses were performed using the SPSS v.11.5 statistical software (SPSS Inc). ANOVA or covariance (ANCOVA) was used to assess the effect of each polymorphism or haplotype on LS BMD, FN BMD and BMI. The covariables used were those with the greatest clinical relevance (BMI and ysm for BMD; ysm for BMI). General, dominant and recessive models were analysed. The
2 and Fisher's exact tests were used to assess Hardy–Weinberg equilibrium (HWE) and the obesity phenotype among different genotypes and haplotypes. A value of P<0.05 was considered statistically significant.
| Results |
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The IL6R promoter polymorphisms rs3887104 and rs4845617, located –1435 and –208 nucleotides from the translation start site respectively, were genotyped in the cohort. They are separated by 1227 bp and were found to be in strong linkage disequilibrium (D'=1 and r2=0.11). Accordingly, only three of the four possible haplotypes were found in the sample. In contrast, the promoter polymorphisms were not in linkage disequilibrium with the exon 9 polymorphism, Asp358Ala (rs8192284), located
50 kb downstream (D'=0.50 and r2=0.03 for –1435 C/T; D'=0.17 and r2=0.03 for –208 G/A). Genotypic and allelic frequencies are shown in Table 2. We estimated the short-range haplotypes, which encompass the polymorphisms in the promoter region. The population frequencies and the number of individuals bearing two, one or no copies of each haplotype are listed in Table 3.
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Results of the ANCOVA tests between the genotypes and the adjusted phenotypes are shown in Table 4. The two promoter polymorphisms were associated with adjusted FN BMD. The –1435 C/T polymorphism was associated under a dominant model (P=0.011) so that carriers of the CC genotype had higher FN BMD values than the rest of the cohort. The downstream polymorphism, –208 G/A, was associated with adjusted FN BMD under a recessive model (P=0.025). The AA genotype group had a significantly higher mean FN BMD value than the other two groups. Neither of the two promoter polymorphisms was associated with LS BMD. In contrast, the Asp358Ala polymorphism was found to be associated with LS BMD in a recessive manner (P=0.038). Subjects who were homozygotes for the C allele (Ala) had higher LS BMD than the remaining individuals.
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Association between haplotypes and LS BMD, FN BMD, BMI and obesity status
We analysed the relationship between the number of copies of each short-range haplotype and LS BMD, FN BMD, BMI or obesity status (Table 5). It was observed that carrying two copies of the C-A haplotype was associated with high FN BMD values (P=0.041) while carrying at least one copy of the T-G haplotype was associated with low FN BMD (P=0.05). Figure 1 summarizes these haplotype results for FN BMD. Individuals with C-A/C-A haplogenotype show significantly higher FN BMD (P=0.011) than those bearing T-G/other haplogenotype. None of the short-range haplotypes was associated with LS BMD.
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| Discussion |
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For the promoter polymorphisms, we were able to identify two different genotypic or haplogenotypic groups that show lower or higher than average FN BMD levels (Fig. 1). The low FN BMD group was defined by the individuals bearing at least one copy of the –1435 T allele (the same group that carried at least one copy of the T-G haplotype, given that the T-A haplotype was absent from the cohort). The estimated mean FN BMD value of this group, which represented
25% of the sample, was 0.037 g/cm2 (0.009–0.066) lower than the corresponding value for the rest of the cohort. At the other end of the distribution, a high FN BMD group was defined by individuals who were homozygous for the A allele at –208 (all were homozygous for the C-A haplotype, given that the T-A haplotype was absent). This group included more than 15% of the sample and exhibited an estimated mean FN BMD that was 0.038 g/cm2 (0.005–0.071) higher than the corresponding value for the rest of the cohort. Therefore, it seems that both polymorphisms are important in defining FN BMD.
Although there is no evidence of the functionality of the –1435 C/T and –208 G/A polymorphisms, these promoter SNPs showed allele-specific consensus sequences for factors such as Cdx2 or NF-1, according to analyses performed with the Genomatix and Signal Scan software packages (38, 39). It is also possible that these polymorphisms could be tagging other functional ones. According to HapMap data, the polymorphisms lie in a haplotypic block of more than 20 kb at the 5' flank of the IL6R gene, which includes synonymous polymorphisms (according to an r2
0.8) for the –208 G/A SNP. No data for the –1435 C/T polymorphism are available in HapMap.
In contrast to the promoter SNPs, the Asp358Ala polymorphism was found to be associated with LS BMD and not with FN BMD. This difference may be explained by the fact that LS and FN have different proportions of trabecular and cortical bone and are partially determined by different genetic variants (2).
Homozygotes for the Ala allele showed higher LS BMD values. The Asp358 is located in the site that is more frequently cleaved to produce the soluble sIL6R (40). Functional analyses have shown that point mutations changing it to Gly, Phe, Leu or Arg reduce the shedding to 22–54% of the wild-type sIL6R and the double point mutation Gln357-Asp358 to Ala357-Ala358 reduces the shedding to 34%. Consequently, the Ala358 allele could be related to lower shedding and therefore to lower sIL6R levels. This, in turn, could lead to reduced osteoclastogenesis, which would be consistent with the higher BMD observed. However, we cannot rule out the possibility that this SNP is in high linkage disequilibrium with other functional polymorphisms. The Asp358Ala polymorphism lies in an LD block of 32 kb, which contains seven confirmed synonymous intronic polymorphisms.
We also investigated the relationship of the IL6R polymorphisms with obesity and found the –208 G/A SNP to be associated with both BMI and obesity status in the cohort. In particular, the GG genotype conferred an increased risk of obesity (OR=1.89 (1.18–3.04)) and a similar effect was observed when looking at haplotypes: individuals who were homozygous for the C-G haplotype or those carrying no copies of the C-A haplotype (which are all homozygotes –208 GG, given the strong linkage disequilibrium observed) had higher BMI. Previous studies have associated polymorphisms of the IL6R gene with BMI. In particular, the Asp358 allele was related to higher BMI in a group of Pima Indians (30) and in a Spanish population (33). In contrast, Hamid et al. (31), Wang et al. (32) and the present study failed to detect this association in a Danish, an American and another Spanish population respectively. Differences in study design and in the age, sex and ethnicity of the patients make it difficult to draw comparisons between these studies. A comprehensive analysis of the complete IL6R genomic region in a high-powered study might help to clarify the role of IL6R variants in obesity. Additionally, functional analyses of particular SNPs might help to understand the molecular basis of the positive association results.
In this study the –208 G/A polymorphism at the IL6R gene was found to be associated with FN BMD and BMI simultaneously. While women who were homozygous for the major allele (G) were at higher risk of obesity, those who were homozygous for the minor allele (A) had higher average FN BMD. This is not the first time that polymorphisms in a gene are related simultaneously to osteoporosis and obesity. For example, genes such as IL6 and RANK, both participating in bone resorption, were associated with BMD and with BMI (41–43). Although it is generally considered that obese women are at lower risk of osteoporosis, there are some controversial results that question this assumption (44). It has recently been proposed that while lean mass is positively correlated with BMD, fat mass is inversely correlated with it (45). A positive correlation between BMI and FN BMD was observed in our cohort but it disappeared when the sample was stratified according to the –208 G/A genotype. Obesity and osteoporosis are diseases that share several features, including a genetic basis. They both can be traced to dysregulation of a common precursor cell. Both diseases are under CNS control and regulated by multiple shared signal molecules such as oestrogens, leptin or IL6 (44). In particular, Deng et al. (2) observed that BMI and BMD shared
10–20% genetic variation and suggested that this could be caused by shared genes with pleiotropic effects on both BMI and BMD. It was also observed that the magnitude of shared genetic and environmental components was higher between FN BMD and BMI than between LS BMD and BMI. This is in agreement with the results of this study in which the –208 G/A polymorphism of IL6R is related to BMI and FN BMD, but not to LS BMD.
In summary, we reported a significant association between polymorphisms of the IL6R gene and BMD, a surrogate marker for osteoporosis. We also observed an association with obesity. Although our sample size is intermediate and the statistical power is therefore limited, the results of this study suggest that IL6R influences these two phenotypes. It is necessary to replicate these results in other populations and it would be very interesting to perform complementary functional analyses.
| Acknowledgements |
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B) gene in a large Caucasian sample. Human Genetics 2006 120 561–570.[ISI][Medline]44. Rosen CJ & Bouxsein ML. Mechanisms of disease: is osteoporosis the obesity of bone?. Nature Clinical Practice. Rheumatology 2006 2 35–43.[ISI][Medline]45. Zhao LJ, Liu YJ, Liu PY, Hamilton J, Recker RR & Deng HW. Relationship of obesity with osteoporosis. Journal of Clinical Endocrinology and Metabolism 2007 92 1640–1646.
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